Cell-ACDC
latest
  • Overview
  • Citation
  • Installation
  • From 0 to Cell-ACDC mastery: A complete guide
  • GUI tools
  • Models for automatic segmentation and tracking
  • Scripts to correct shifts in bidirectional scanning
  • Cell-ACDC output data
  • Versions
  • Other
Cell-ACDC
  • Cell-ACDC
  • Edit on GitHub

acdclogo Cell-ACDC

A GUI-based Python framework for segmentation, tracking, cell cycle annotations and quantification of microscopy data

Written in Python 3 by Francesco Padovani and Benedikt Mairhoermann.

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Overview of pipeline and GUI

Overview of pipeline and GUI

Contents

  • Overview
    • Is it only about segmentation?
  • Citation
  • Installation
    • Installation using Anaconda (recommended)
    • Advanced install methods
  • From 0 to Cell-ACDC mastery: A complete guide
    • Running Cell-ACDC
    • The Main Menu
    • Creating Data Structures
    • Preparing data for further analysis
    • Segmentation and tracking
    • Correcting Tracking and Segmentation Mistakes, Cell Cycle Annotation
  • GUI tools
    • File control
    • View options
    • Edit tools: Segmentation and tracking
    • Edit tools: Cell cycle analysis
  • Models for automatic segmentation and tracking
    • Preinstalled models
    • Adding a new Model
  • Scripts to correct shifts in bidirectional scanning
  • Cell-ACDC output data
  • Versions
    • Update v1.2.4
  • Other
    • Resources
    • Usage
    • How to contribute

Important links

  • GitHub

  • Publication

  • Forum

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© Copyright 2023, Francesco Padovani and Benedikt Mairhoermann. Revision 2510ce55.

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